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List of related papers

Please cite this paper and our URL, when you use U-Compare in your work. For example,

U-Compare, http://u-compare.org/, (Kano et al., 2009a)

Kano, Yoshinobu, William A. Baumgartner Jr., Luke McCrohon, Sophia Ananiadou, K. Bretonnel Cohen, Lawrence Hunter and Jun'ichi Tsujii U-Compare: share and compare text mining tools with UIMA. Bioinformatics. 25(15), pp. 1997-1998, 2009; doi: 10.1093/bioinformatics/btp289
abstract (journal website) pdf bib enl


U-Compare System

Papers about the U-Compare system concepts, designs, and implementations.

Y. Kano, M. Miwa, K. Cohen, L. Hunter, S. Ananiadou, and J. Tsujii, U-Compare: a modular NLP workflow construction and evaluation system. IBM Journal of Research and Development, vol. 55, no. 3, pp. 11:1-11:10, 2011.
[IEEE Explore]

Kano, Yoshinobu, Ruben Dorado, Luke McCrohon, Sophia Ananiadou and Jun'ichi Tsujii. U-Compare: An integrated language resource evaluation platform including a comprehensive UIMA resource library. In the Seventh International Conference on Language Resources and Evaluation (LREC 2010). Valletta, Malta, pp. 428--434, European Language Resources Association (ELRA), May 2010.

Kano, Yoshinobu, Paul Dobson, Mio Nakanishi, Jun'ichi Tsujii and Sophia Ananiadou. Text Mining Meets Workflow: Linking U-Compare with Taverna. Bioinformatics. 2010;; doi: 10.1093/bioinformatics/btq464
abstract (journal website) pdf

Kano, Yoshinobu, Luke McCrohon, Sophia Ananiadou and Jun'ichi Tsujii. Integrated NLP Evaluation System for Pluggable Evaluation Metrics with Extensive Interoperable Toolkit. In the Software engineering, testing, and quality assurance for natural language processing workshop (SETQA-NLP), NAACL-HLT. Boulder, Colorado, USA, pp. 22-30, June 2009.
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Kano, Yoshinobu, William A. Baumgartner Jr., Luke McCrohon, Sophia Ananiadou, K. Bretonnel Cohen, Lawrence Hunter and Jun'ichi Tsujii U-Compare: share and compare text mining tools with UIMA. Bioinformatics. 25(15), pp. 1997-1998, 2009;; doi: 10.1093/bioinformatics/btp289
abstract (journal website) pdf bib enl

Kano, Yoshinobu, Ngan Nguyen, Rune S\aetre, Kazuhiro Yoshida, Yusuke Miyao, Yoshimasa Tsuruoka, Yuichiro Matsubayashi, Sophia Ananiadou and Jun'ichi Tsujii. Filling the gaps between tools and users: a tool comparator, using protein-protein interaction as an example. In the Proceedings of The Pacific Symposium on Biocomputing (PSB). 13. Hawaii, USA, pp. 616-627, January 2008.
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Kano, Yoshinobu, Ngan Nguyen, Rune S\aetre, Kazuhiro Yoshida, Keiichiro Fukamachi, Yusuke Miyao, Yoshimasa Tsuruoka, Sophia Ananiadou and Jun'ichi Tsujii. Towards Data And Goal Oriented Analysis: Tool Inter-Operability And Combinatorial Comparison. In the Proceedings of the 3rd International Joint Conference on Natural Language Processing (IJCNLP). Hyderabad, India, January 2008.
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Kano, Yoshinobu, Ngan Nguyen, Rune S\aetre, Keiichiro Fukamachi, Kazuhiro Yoshida, Yusuke Miyao, Yoshimasa Tsuruoka, Sophia Ananiadou and Jun'ichi Tsujii. Sharable type system design for tool inter-operability and combinatorial comparison. In the Proceedings of the First International Conference on Global Interoperability for Language Resources (ICGL). Hong Kong, January 2008.
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U-Compare Related

Kim, Jin-Dong, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano and Jun'ichi Tsujii. Overview of BioNLP'09 Shared Task on Event Extraction. In the Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task. pp. 1--9, 2009.
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Applications of U-Compare